姓名：戚繼
職稱：研究員
職務：
電子郵箱：qij@fudan.edu.cn
辦公地點：万博英超狼队网官方网 E401-9室
辦公電話：021- 31246533
個人網頁/課題組主頁：
研究方向
主要從事計算生物學相關方向的研究，包括：
1. 基因組序列多態性與減數分裂重組現象研究：結合高通量測序手段和比較基因組學方法研究模式生物基因組的序列多態性；基於親本和減數分裂子代的基因組差異研究減數分裂重組現象的分子機製。
2. 使用係統發育基因組學相關方法研究基因組多倍化後重複基因的保留與功能分化。
3. 利用高通量測序技術精確預測序列多態性和結構變異等生物信息學算法研究，以解決生物問題為目的推動計算生物學方法的發展。
4. 通過數理統計方法分析微生物基因組的物種特異性特征，有效預測環境微生物的群落構成。
個人簡介
男，1977年出生，博士，教授。1995-1999年就讀吉林大學物理係，獲學士學位；1999-2004就讀於中國科學院理論物理研究所，獲博士學位；2005-2010年在美國賓州州立大學比較基因組學和生物信息學中心從事博士後研究；2010年受聘万博英超狼队网官方网 ，先後任副教授、研究員。
授課情況
本科生課程生物信息學
招生專業
生物統計與生物信息
代表性論文和論著
Shengyu Zhou, Yamao Chen, Chunce Guo* and J. Qi* (2020) PhyloMCL: accurate clustering of hierarchical orthogroups guided by phylogenetic relationship and inference of polyploidy events. Methods in Ecology and Evolution 11(8):943-954
Caifei Zhang, Taikui Zhang, Federico Luebert, Yezi Xiang, Yi Hu, Matthew Rees, Michael Frohlich, Claude W. dePamphilis, Ji Qi*, Maximilian Weigend* and Hong Ma*. (2020) Asterid Phylogenomics/Phylotranscriptomics Uncover Morphological Evolutionary Histories and Support Phylogenetic Placement for Numerous Whole-Genome Duplications. Mol. Biol. Evol. 37(11):3188–3210
J. Liu, Q. Lian, Y. Chen and J. Qi* (2019) Amino acid based de Bruijn graph algorithm for identifying complete coding genes from metagenomic and metatranscriptomic short reads. Nucleic Acids Res. 47: e30
H. Wang, C. Guo, H. Ma, and J. Qi* (2019) Reply to Zwaenepoel et al.: meeting the challenges of detecting polyploidy events from transcriptomic data. Mol. Plant 2(2):137-140.
Ren Ren#, Haifeng Wang#, Chunce Guo#, Ning Zhang, Liping Zeng, Yamao Chen, Hong Ma*, Ji Qi* (2018) Widespread whole genome duplications contribute to genome complexity and species diversity in angiosperms. Mol. Plant 11: 414-428.
C.-H. Huang, C. Zhang, M. Liu, Y. Hu, T. Gao, J. Qi,* and Hong Ma* (2016) Multiple polyploidization events across Asteraceae with two nested events in the early history revealed by nuclear phylogenomics. Mol. Biol. Evol. 33: 2820-2835.
H. Li#, Q. Shi#, Z. Zhang, L. Zeng, J. Qi*, and H. Ma*. (2016) Evolution of the LRR-RLK gene family: Ancestral copy number and functional divergence of BAM1 and BAM2 in Brassicaceae. J. Syst. Evol. 54: 204-218.
N. Ye#*, X. Zhang#, M. Miao#, X. Fan, Y. Zheng, D. Xu, J. Wang, L. Zhou, D. Wang, Y. Gao, Y. Wang, W. Shi, P. Ji, D. Li, Z. Guan, C. Shao, Z. Zhuang, Z. Gao, J. Qi*, F. Zhao* (2015) Saccharina genomes provide novel insight into kelp biology. Nat Commun. 6:6986
H. Yang#, F. Chang#*, C. You, J. Cui, G. Zhu, L. Wang, Y. Zheng, J. Qi*, H. Ma* (2015) Whole-genome DNA methylation patterns and complex associations with gene structure and expression during flower development in Arabidopsis. Plant J. 81: 268-281
J. Qi, Y. Chen, G. P. Copenhaver, H. Ma (2014) Detection of genomic variations and DNA polymorphisms and impact on analysis of meiotic recombination and genetic mapping. P Natl Acad Sci U S A. 111: 10007-10012 (IF=9.809)